SNP Profiles of GU 133 /C   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCGGCGCCTTCCTTTTCCCCAAGGCCGG
1._RUQ_190
__CG____TT_CC_GG_GG
2._RUQ_190
_GGCGCC___TT____CCGG
3._GC-08-164-4-07
CCGGCGCCTT_TTTTCCCCAAGGCCGG
4._GC-08-164-4-07
CCGGCGCCTT_TTTTCCCCAAGGCCGG
5._GC-01-116-6-13
CCGGCGCCTT_TTTTCCCCAAGGCCGG
6._GC-01-116-6-13
CCGGCGCCTT_TTTTCCCCAAGGCCGG
7._GC-01-116-6-13
CCGGCGCCTT_TTTTCCCCAAGGCCGG
8._GU_133_/C
CCGGCGCCTT_TTTTCCCCAAGGCCGG
9._GU_133_/C
CCGGCGCCTT_TTTTCCCCAAGGCCGG
10._GU_133_/C
CCGGCGCCTT_TTTTCCCCAAGGCCGG
11._GU_133_/C
CCGGCGCCTT_TTTTCCCCAAGGCCGG
12._GU_133_/C
CCGGCGCCTT_TTTTCCCCAAGGCCGG
13._GU_133_/C
CCGGCGCCTT_TTTTCCCCAAGGCCGG
14._GC-08-164-4-07
CCGGCGCCTT_TTTTCCCCAAGGCCGG
15._GC-01-116-6-13
CCGGCGCCTT_TTTTCCCCAAGGCCGG
16._GC-08-164-4-07
CCGGCGCCTT_TTTTCCCCAAGGCCGG
17._GU_133_/C
CCGGCGCCTT_TTTTCCCCAAGGCCGG
18._GU_133_/C
CCGGCGCCTT_TTTTCCCCAAGGCCGG
19._GU_133_/C
CCGGCGCCTT_TTTTCCCCAAGGCCGG
20._GU_133_/C
CCGGCGCCTT_TT_CCCCAAGGCCGG
21._GC-08-164-4-07
CCGGCGCCTT_TTTTCCCCAAGGCCGG
22._GC-08-164-4-07
CCGGCGCCTT_TT_CCCCAAGGCCGG
23._GU_133_/C
CCGGCGCC__TT_CCCCAAGGCCGG
24._GC-01-116-6-13
CCGGCGCC__TT_CCCCAAGGCCGG
25._RUQ_190
__CG_________CC_
26._MITC-000670
GGGGCGGGAACCAAAA__AAGGGGGG
27._GC-01-116-6-13
GGGGCGGGAA_AAAA__AAGGGGGG
 1516171819202122232425262728
_Input profile
CCAAGGCCCCGGGGAACCACCCGGCCAA
1._RUQ_190
_____GGGGAA_ACCC__AA
2._RUQ_190
____CCGGGG_CCACCCGGCCAA
3._GC-08-164-4-07
CCAAGGCCCCGGGGGGCCACCCGGCCAA
4._GC-08-164-4-07
CCAAGGCCCCGGGGGGCCACCCGGCCAA
5._GC-01-116-6-13
CCAAGGCCCCGGGGGGCCACCCGGCCAA
6._GC-01-116-6-13
CCAAGGCCCCGGGGGGCCACCCGGCCAA
7._GC-01-116-6-13
CCAAGGCCCCGGGGGGCCACCCGGCCAA
8._GU_133_/C
CCAAGGCCCCGGGGGGCCACCCGGCCAA
9._GU_133_/C
CCAAGGCCCCGGGGGGCCACCCGGCCAA
10._GU_133_/C
CCAAGGCCCCGGGGGGCCACCCGGCCAA
11._GU_133_/C
CCAAGGCCCCGGGGGGCCACCCGGCCAA
12._GU_133_/C
CCAAGGCCCCGGGGGGCCACCCGGCCAA
13._GU_133_/C
CCAAGGCCCCGGGGGGCCACCCGGCCAA
14._GC-08-164-4-07
CCAAGGCCCCGGGGGGCCACCCGGCCAA
15._GC-01-116-6-13
CCAAGGCCCCGGGGGGCCACCCGGCCAA
16._GC-08-164-4-07
CCAAGGCCCCGGGGGGCCACCCGGCCAA
17._GU_133_/C
CCAAGGCCCCGGGGGGCCACCCGGCCAA
18._GU_133_/C
CCAAGGCCCCGGGGGGCCACCCGGCCAA
19._GU_133_/C
CCAAGGCCCCGGGGGGCCACCCGG_AA
20._GU_133_/C
CCAAGGCCCCGGGGGGCCACCCGGCCAA
21._GC-08-164-4-07
CCAAGGCCCCGGGGGGCCACCCGG_AA
22._GC-08-164-4-07
CCAAGGCCCCGGGGGGCCACCCGGCCAA
23._GU_133_/C
CCAAGGCC_GGGGGGCCACCCGGCCAA
24._GC-01-116-6-13
CCAAGGCC_GGGGGGCCACCCGGCCAA
25._RUQ_190
CC___CCCC___ACCC___
26._MITC-000670
GGAAGGGGGGCCCC_GGACCCCC_AA
27._GC-01-116-6-13
GGAAGGGGGGCCCC_GGACCCCC_AA
 293031323334353637383940  
_Input profile
GGGGAACCGGCCAATTGTAAATGGX_XX_X
1._RUQ_190
____GG____AA__X_XX_X
2._RUQ_190
GG_AACCGGCCAATTTTAA__X_XX_X
3._GC-08-164-4-07
GGGGAACCGGCCAATTTTAAATGGX_XX_X
4._GC-08-164-4-07
GGGGAACCGGCCAATTTTAAATGGX_XX_X
5._GC-01-116-6-13
GGGGAACCGGCCAATTTTAAATGGX_XX_X
6._GC-01-116-6-13
GGGGAACCGGCCAATTTTAAATGGX_XX_X
7._GC-01-116-6-13
GGGGAACCGGCCAATTTTAAATGGX_XX_X
8._GU_133_/C
GGGGAACCGGCCAATTTTAAATGGX_XX_X
9._GU_133_/C
GGGGAACCGGCCAATTTTAAATGGX_XX_X
10._GU_133_/C
GGGGAACCGGCCAATTTTAAATGGX_XX_X
11._GU_133_/C
GGGGAACCGGCCAATTTTAAATGGX_XX_X
12._GU_133_/C
GGGGAACCGGCCAATTTTAAATGGX_XX_X
13._GU_133_/C
GGGGAACCGGCCAATTTTAAATGGX_XX_X
14._GC-08-164-4-07
GGGGAACCGGCCAATTTTAAATGGX_XX_X
15._GC-01-116-6-13
GGGGAACC_CCAATTTTAAATGGX_XX_X
16._GC-08-164-4-07
GGGGAACCGGCC_TTTTAAATGGX_XX_X
17._GU_133_/C
GGGGAACC_CCAATTTTAAATGGX_XX_X
18._GU_133_/C
GGGGAACCGGCC_TTTTAAATGGX_XX_X
19._GU_133_/C
GGGGAACCGGCCAATTTTAAATGGX_XX_X
20._GU_133_/C
GGGGAACCGGCCAATTTTAAATGGX_XX_X
21._GC-08-164-4-07
GGGGAACCGGCCAATTTTAAATGGX_XX_X
22._GC-08-164-4-07
GGGGAACCGGCCAATTTTAAATGGX_XX_X
23._GU_133_/C
GGGGAACC_CCAATTTTAAATGGX_XX_X
24._GC-01-116-6-13
GGGGAACC_CCAATTTTAAATGGX_XX_X
25._RUQ_190
__AA_GGGGAATT_AA__X_XX_X
26._MITC-000670
_GGAAGGGGGGAAAAAAAAATGGX_XX_X
27._GC-01-116-6-13
_GGAAGGGGGGAAAAAAAAATGGX_XX_X

Input profile: GU_133_/C RUQ_190

 
 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._GU_133_/C RUQ_190

identical
13 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._GU_133_/C RUQ_190

97.9 %
24 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._GU_133_/C GC-08-164-4-07

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._GU_133_/C GC-08-164-4-07

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._GU_133_/C GC-01-116-6-13

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

6._GU_133_/C GC-01-116-6-13

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

7._GU_133_/C GC-01-116-6-13

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._GU_133_/C

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

9._GU_133_/C

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

10._GU_133_/C

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

11._GU_133_/C

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

12._GU_133_/C

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

13._GU_133_/C

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

14._GU_133_/C GC-08-164-4-07

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

15._GU_133_/C GC-01-116-6-13

96.1 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

16._GU_133_/C GC-08-164-4-07

96.1 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

17._GU_133_/C

96.1 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

18._GU_133_/C

96.1 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

19._GU_133_/C

96.1 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

20._GU_133_/C

96.1 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

21._GU_133_/C GC-08-164-4-07

96.1 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

22._GU_133_/C GC-08-164-4-07

96.1 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

23._GU_133_/C

95.7 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

24._GU_133_/C GC-01-116-6-13

95.7 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

25._GU_133_/C RUQ_190

84.6 %
13 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

26._GU_133_/C MITC-000670

51.4 %
35 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

27._GU_133_/C GC-01-116-6-13

50 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25